Route Natal Streams

Determines if juveniles stay in their natal tributary, are detoured to a bypass, or out migrate during a simulated month

route(
  year,
  month,
  juveniles,
  inchannel_habitat,
  floodplain_habitat,
  prop_pulse_flows,
  vernalis_flows,
  freeport_flows,
  .pulse_movement_intercept,
  .pulse_movement_proportion_pulse,
  .pulse_movement_medium,
  .pulse_movement_large,
  .pulse_movement_vlarge,
  .pulse_movement_medium_pulse,
  .pulse_movement_large_pulse,
  .pulse_movement_very_large_pulse,
  filling_fn = fallRunDSM::fill_natal,
  filling_args = NULL,
  movement_fn = NULL,
  movement_args = NULL,
  movement_months = NULL,
  territory_size,
  stochastic
)

Source

IP-117068

Arguments

year

The current simulation year, 1-20

month

The current simulation month, 1-8

juveniles

An n by 4 matrix of juvenile fish by watershed and size class

inchannel_habitat

A vector of available habitat in square meters

floodplain_habitat

A vector of available floodplain habitat in square meters

prop_pulse_flows

The proportion of pulse flows

.pulse_movement_intercept

Intercept for pulse_movement

.pulse_movement_proportion_pulse

Coefficient for pulse_movement proportion_pulse variable

.pulse_movement_medium

Size related intercept for pulse_movement medium sized fish

.pulse_movement_large

Size related intercept for pulse_movement large sized fish

.pulse_movement_vlarge

Size related intercept for pulse_movement very large sized fish

.pulse_movement_medium_pulse

Additional coefficient for pulse_movement proportion_pulse variable for medium size fish

.pulse_movement_large_pulse

Additional coefficient for pulse_movement proportion_pulse variable for large size fish

.pulse_movement_very_large_pulse

Additional coefficient for pulse_movement proportion_pulse variable for very large size fish

territory_size

Array of juvenile fish territory requirements for fill_natal

stochastic

TRUE FALSE value indicating if model is being run stochastically

Details

See params for details on parameter sources